Class: SequenceAlignment

A sequence alignment is the character-based alignment of sequences using some method.

URI: sio:SequenceAlignment

Parents

• is_a: Collection - A collection is a set for which there exists at least one member, although any member need not to exist at any point in the collection's existence.

Children

• MultipleSequenceAlignment - A multiple sequence alignment is a sequence alignment involving more than two sequences.
• PairwiseSequenceAlignment - A pairwise sequence alignment is the alignment of exactly 2 sequences.

Referenced by Class

Attributes

Inherited from Collection:

• hasCreator _0..1
  • Description: has creator is a relation between an entity and that which created it.
  • Range: Entity

• hasAttribute _0..1

  • Description: has attribute is a relation that associates a entity with an attribute where an attribute is an intrinsic characteristic such as a quality, capability, disposition, function, or is an externally derived attribute determined from some descriptor (e.g. a quantity, position, label/identifier) either directly or indirectly through generalization of entities of the same type.

  • Range: Entity

  • satisfies _0..1

  • Description: satisfies is a relation between an entity and the specification or objective that it conforms to.

  • Range: Description

  • isRelatedTo _0..1
  • Description: A is related to B iff there is some relation between A and B.
  • Range: Entity
  • derivesInto _0..1

  • Description: a derives to b if and only if a or some part thereof is consumed in the formation of b.

  • Range: Object

  • hasUnit _0..1
  • Description: has unit is a relation between a quantity and the unit it is a multiple of.
  • Range: UnitOfMeasurement
  • hasMember _0..1
  • Description: has member is a mereological relation between a collection and an item.
  • Range: Entity