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http://semanticscience.org/ontology/sio.owl
Entities A-Z
Classes
Properties
Statistics
Classes (1570)
1D cartesian point
1D extent quantity
2D cartesian point
2D extent quantity
3' splice site
3' untranslated region
3D cartesian coordinate
3D cartesian point
3D extent quantity
3d structure model
5' splice site
5' untranslated region
a collection of duplicates
a collection of replicates
a little quantifier
abnormal
aborted
abstract role
abstract section
academic
academic department
academic organization
academic role
acid
acid-base reaction
acknowledgements section
actinium atom
action specification
activator
activator role
active ingredient
active movement
active site
active transport
addition reaction
address
administrative role
affection
affiliation
age
aggregated carbon nanorods
agreement
agreement quality
algorithm
alive
allele
allosteric site
allotrope
alpha helix
altitude
aluminium atom
always
americium atom
amino acid
amino acid polymer
amino acid polymer submolecule
amino acid residue
amorphous carbon
anabolism
analyte
anatomical entity
anger
angst
anion
annotation
annoyance
answer
antibody
antigen
antimony atom
antiport enabled secondary active transport
antonym
anxiety
apartment number
apathy
apprehension
arc
area
argon atom
argument
aromatic bond
aromatic ring
arousal
arrowed line segment
arsenic atom
article
aspect ratio
assay
assertion ovopub
assertional qualifier
association
astatine atom
atom
attribute
audio recording
author contribution section
author list
author role
author section
awe
axis
bar
bar graph
barium atom
base
base pair
base stack
behaviour
belief
bent
berkelium atom
beryllium atom
beta strand
bibliography section
bill
binary compound
binary scale
binding site
biochemical activation
biochemical inhibition
biochemical pathway
biochemical reaction
bioinformatic data
biologic
biological data
biological entity
biological fluid
biological quality
biological reproduction
biological sex
biomolecular structure descriptor
biopolymer
biopolymer sequence
biosynthesis
birthing
bismuth atom
block histogram
blog
bohrium atom
boldness
book
book section
book series
book volume
booklet
boredom
boron atom
bottom value axis
boxplot
brand name
brief
bromine atom
brownian motion
bubble chart
buffer
buffer role
cadmium atom
caesium atom
calcium atom
californium atom
cancelled
capability
carbohydrate
carbohydrate residue
carbon allotrope
carbon atom
carbon nanofoam
cartesian coordinate
Cartesian coordinate axis
cartesian coordinate system
catabolism
catalog
catalyst
catalytic role
catalyzed reaction
category
category axis
cation
cation pi interaction
cell
cell line
cell (informational)
cellular organism
cellular phone number
cellular quality
center of mass
centrality measure
centrifugation pellet
centrifugation substance
century
cerium atom
chaoite
chapter
character
character position
charge quality
charged
chart
chemical-disease association
chemical-gene assocation
chemical-pathway association
chemical complex
chemical data
chemical degradation pathway
chemical destruction
chemical effect
chemical element
chemical entity
chemical entity role
chemical exposure
chemical functional group
chemical identifier
chemical interaction
chemical notation
chemical quality
chemical reaction
chemical reaction pathway
chemical salt
chemical structure
chemical substance
chemical substance role
chemical synthesis
chemical synthesis pathway
chemical transport
chlorine atom
chromium atom
chromosome
circularly helical
circumference
cis regulatory element
citation
city
class
clause
clinical trial
closed interval
co-enzyme role
co-substrate role
cobalt atom
coding frame offset
coding sequence
cofactor role
collection
collection item
collection of 3d molecular structure models
collection of documents
collection of points
collection ovopub
collective
column
comment
common name
communicating
communication device
community
comparative role
comparing
complete charge
completed
completely quantifier
compositional quality
computational entity
concentration
concept
conclusion
conference proceedings
conjunction (and)
consensus
consonant
containment quality
contempt
contentment
control group
control role
control variable
controlled observational cohort study
conversing
coordinate
coordinate system
copernicium atom
copper atom
copy number variation
copyright section
corporation
correlation
correspondence section
count
country
covalent bond
creating
criterion
crystal structure
curiosity
curium atom
curvature
curve
curve segment
curved
cylindrical coordinate system
darmstadtium atom
data analysis
data collection
data collection device
data item
data point
data series
data storage device
data transformation
database
database column
database cross-reference
database entry
database key
database row
database table
dataset
date of database submission
date of issue
day
dead
decimal scale
decomposition reaction
decrease in number of objects produced
decreased
decreased chemical destruction
decreased duration of process from increased regulation
decreased frequency of process from increased regulation
decreased molecular degradation from decreased regulation
decreased molecular degradation from increased regulation
decreased molecular production from decreased regulation
decreased molecular production from increased regulation
decreased object consumption from increased regulation
decreased object production from increased regulation
decreased spatial extent of process from decreased regulation
decreasing line
deductive argument
default parameter
definition
deletion variant role
dendrogram
density
dentist role
deoxyribonucleic acid
deoxyribonucleic acid primer
deoxyribonucleic acid sequence
deoxyribonucleic acid template
deoxyribonucleotide residue
department chair role
dependent variable
depression
depth
description
descriptor
design
design specification
desire
despair
destroying
device
diagnosis
diagnostic opinion
diagnostic test
diamond
diary
diastereomer
difference in number of objects produced
differential diagnosis
differential equation
differential gene expression ratio
diffusion
diffusion equation
dimensional quantity
dimensionless quantity
dipole-dipole interaction
directed acyclic graph
directed line segment
DisGeNET disease specificity
DisGeNET Pleiotropy Index
disagreement
disappointment
discouragement
discussion section
disease
disgust
disjunction (or)
disordered
displacement reaction
disposition
dissatisfied qualifier
disulfide bond
dna gene
doctor
doctor role
document
document component
document section
document title
document version
dose
double arrowed line segment
double bond
double displacement reaction
double stranded DNA
double stranded nucleic acid
double stranded RNA
draft
dread
drop line
drug
drug drug interaction
drug regulatory authority
dubnium atom
duplicate
duplicate role
dying
dysfunction
dysprosium atom
e.coli
ecstasy
edge
edited publication
edition number
editor reviewed
effective dose
einsteinium atom
electronic structure
electrophilic addition reaction
email
email address
embarassment
emotion
empty
empty set
enantiomer
end date
end position
end time
endpoint
entity
environment
envy
enzyme
epimer
epimer association
equation
erbium atom
ethnic group
ethnicity
euphoria
europium atom
evaluation role
evidence
evolutionary lineage
evolving
exact cross-reference
excellent quality
excerpt
excitement
exclusion criterion
exclusive disjunction (xor)
existence quality
exon
expected value
experiment
experimental protocol
false
family
family history
fatal
fax number
fear
female
fermium atom
fictional
figure
figure part
file
finalized
first name
fitness
flowchart
fluorine atom
foreign database key
formal specification
francium atom
free radical addition
frequency
frustration
full
full agreement
full disagreement
fullerene
function
functional rna coding gene
functional specification
fusion gene-disease association
gadolinium atom
gallium atom
Gantt chart
gene
gene-disease association
gene-disease association linked with altered gene expression
gene-disease association linked with causal mutation
gene-disease association linked with chromosomal rearrangement
gene-disease association linked with genetic variation
gene-disease association linked with genomic alterations
gene-disease association linked with germline causal mutation
gene-disease association linked with germline modifying mutation
gene-disease association linked with modifying mutation
gene-disease association linked with post-translational modification
gene-disease association linked with somatic causal mutation
gene-disease association linked with somatic modifying mutation
gene-disease association linked with susceptibility mutation
gene-disease biomarker association
gene component
gene enhancer
gene expression value
gene promoter
gene regulatory component
gene symbol
generation number
generic name
genetic data
genetic polymorphism
genome
genomic sequence variant
genotype
geographic heatmap
geographic image
geographic position
geographic region
geolegal region
geometric entity
geopolitical region
germanium atom
gesturing
glassy carbon
global maximal stationary point
global minimal stationary point
gold atom
good quality
graduate student advisor role
graph title
graphite
gratitude
grief
guilt
hafnium atom
haplotype
happiness
hard disk drive
hassium atom
hate
healthy
heatmap
height
helicity
helium atom
hemizygous
hermaphrodite
heterocyclic ring
heterogeneous
heterogeneous substance
heterozygous
hgvs notation
histogram
history
hole
holmium atom
home phone number
homocyclic ring
homogeneous
homogeneous substance
homonym
homozygous
honor's thesis
hope
horizontal bar graph
horizontal line
host
host role
hostility
hour
human
human population
humiliation
hunger
hurt
hydrogen atom
hydrogen bond
hypernym
hyponym
hypothesis
hypothetical
hysteria
IP number
idea
identifier
image
implies (->)
InCHI notation
inactive ingredient
inclusion criterion
increase in number of objects produced
increased
increased chemical destruction
increased duration of process from increased regulation
increased frequency of process from increased regulation
increased molecular degradation from decreased regulation
increased molecular degradation from increased regulation
increased molecular production from decreased regulation
increased molecular production from increased regulation
increased object consumption from increased regulation
increased object production from increased regulation
increased spatial extent of process from increased regulation
increasing line
indecision
independent variable
indifference
indium atom
inductive argument
infinite line
information content entity
information decoding
information encoding
information maintenance
information processing
information translation
informational entity identifier
informational quality
ingredient
inhibitor
inhibitor role
inorganic reaction
insertion variant role
institute
integer scale
intensity
intent
interacting
interest
intersection
intersex
interval
intervention group
intervention study
introduction section
intron
invalid argument
investigation
investigational role
iodine atom
ion
ionic compound
ionic interaction
ionsdaleite
iridium atom
iron atom
irritability
isomer
isomerization reaction
issue
jealousy
journal
joy
justification
keyword
krypton atom
label
language
language entity
language label
lanthanum atom
last name
latitude
lawrencium atom
lead atom
learning
left-handed helical
left closed interval
left open interval
left value axis
legal document
legal name
legend
legislation
length
length of perimeter
letter
life status
ligand
likelihood
line
line-bar graph
line graph
line segment
linear position
linear value axis
lipid
lipid residue
liquid solution
liquid solution component
list
list item
literature curation
lithium atom
loathing
local maximum stationary point
local minimum stationary point
locomotion
log likelihood
logarithmic value axis
logical operator
loneliness
longitude
love
low barrier hydrogen bond
lust
lutetium atom
mRNA splice variant
magazine
magnesium atom
maintenance of duration of process
maintenance of frequency of process
maintenance of level of object consumption
maintenance of quantity of object production
maintenance of spatial extent of process
major tick mark
major version number
male
manganese atom
manual
manuscript
map
mass
mass spectrometer
mass spectrometry experiment
master's thesis
material boundary
material entity
materials and methods section
materials section
maternally transmitted
mathematical entity
matrix
matrix chart
mature mRNA
maximal value
mean
measurement scale
measurement value
measuring
media
median
medical data
medical diagnosis
medical health record
medical history
medical intervention
medical practitioner
medical procedure
medical report
medical role
medical screening
meitnerium atom
member count
membrane transport
mendelevium atom
mercury atom
mereological chart
mereological quality
messenger
messenger RNA
metabolic pathway
metabolism
metadata
methods section
microRNA (miRNA)
microarray device
microarray experiment
microarray probe set identifier
middle initial
middle name
mild
millennium
minimal value
minor tick mark
minor version number
minute
misery
mode
model
moderate
moderately quantifier
modifying
molecular complex
molecular complex dissociation
molecular complex formation
molecular entity role
molecular identifier
molecular modification
molecular orbital
molecular pocket
molecular regulator
molecular site
molecular structure
molecular structure descriptor
molecular structure file
molecular tracer role
molecule
molybdemum atom
monomer
monosaccharide
month
morpheme
most of the time
mostly quantifier
mouse
movement
movement equation
movie
multicellular organism
multiple sequence alignment
mutual disposition
name
namespace
namespace label
negation (not)
negative
negative charge
negative emotion
negative nucleic acid strand
neither good nor poor quality
neither satisfied or dissatisfied qualifier
neodymium atom
neon atom
neptunium atom
network diagram
never
newspaper
nickel atom
niobium atom
nitrogen atom
nmr device
nobelium atom
node
nomimal scale
non-cellular organism
non-polar
non-polar addition reaction
non-protein coding RNA (ncRNA)
non-protein coding RNA (ncRNA) gene
non toxic
none quantifier
nonpolar solvent
normal
normality
not started
notation
note
novel
nucleic acid
nucleic acid part
nucleic acid sequence
nucleic acid strand
nucleophilic addition reaction
nucleotide residue
nullizygous
number
number of objects consumed
number of objects produced
numeric label
numeric scale
nurse
nurse role
OBO ontology
OWL ontology
object
object model
object quality
object relational quality
objective
observational study
observing
occupational role
oligopeptide
ongoing
ontology
ontology document
open interval
open reading frame
operon
opinion
optical isomer
ordered list
ordered list item
ordinal position
ordinary differential equation
organ
organic molecule
organic polymer
organic reaction
organic submolecule
organism
organization
orientation
osmium atom
osmosis
ovopub
oxygen atom
PDB chain identifier
PDB file
PDB record identifier
pH
page number
page range
page total
pain
pairwise sequence alignment
palladium atom
panic
paragraph
parameter
parameterized data transformation
parental transmission
partial charge
partial differential equation
partial negative charge
partial positive charge
passion
passive movement
passive transport
patent
paternally transmitted
pathogen
pathway
patient
patient role
pattern
peer-reviewed
peer reviewed article
peptide
percentage
percentile
perception
periodical
person
personal name
pharmaceutical drug
pharmaceutical ingredient
pharmacodynamic pathway
pharmacokinetic pathway
phd thesis
phenotype
phosphorus atom
photograph
phrase
phrase net diagram
physical entity identifier
pie chart
pity
placebo
plan
planned
planning
plateau line
platinum atom
pleasure
ploidy
plot
plutonium atom
point
poison
poison role
polar
polar addition reaction
polar coordinate
polar coordinate system
polar quality
polar solvent
polonium atom
polygon
polygon edge
polygon vertex
polygonal face
polyhedral skeleton
polyhedral surface
polyline
polymer
polypeptide
poor quality
population
position
positional identifier
positional role
positionally oriented line
positive
positive charge
positive emotion
positive nucleic acid strand
post-translational modification
postal code
potassium atom
praseodymium atom
pre-mRNA
predicted
predicted gene
predicting
preferred name
premise
pride
primary active transport
primary category axis
primary database key
primary graph title
primary structure descriptor
primary title
primer
probability measure
probability value
procedure
process
process down-regulation
process maintenance
process model
process number
process quality
process status
process up-regulation
processual role
product
product role
professor
professor role
prognosis
promethium atom
proposition
prosthetic group role
protactinium atom
protein
protein coding gene
protein coding sequence
protein complex
protein domain
protein expression value
protein family
protein mediated regulation of translation
protein sequence
province
pseudogene
publication
publisher role
publishing role
purpose
quadrilateral
quality
quality descriptor
quantile
quantity
quantity modifier
quaternary structure
question
quote
RDFS ontology
REST web service
RNA transcript
RNA transcript component
race
radar
radio receiver
radium atom
radon atom
rage
rank nonzero tensor
rat
rate of change
ratio
ray
reactant role
reagent
reagent role
real
realizable entity
reason
reasoning
receptor
recipe
record
record identifier
rectangle
redox reaction
reference
referencing cell
referent cell
regret
regulating
regulation of biochemical process
regulation of capability
regulation of catalytic capability
regulation of molecular degradation
regulation of molecular production
regulation of molecular quantity
regulation of object consumption
regulation of object production
regulation of object quantity
regulation of process
regulation of process duration
regulation of process frequency
regulation of process spatial extent
regulation of transcription
regulation of translation
regulator role
regulatory authority
regulatory pathway
remorse
replica quality
replicate
replicate role
report
representation
reproducing
resentment
results section
reviewed
revision number
rhenium atom
rhodium atom
ribonucleic acid
ribonucleic acid sequence
ribonucleotide residue
ribosomal RNA gene
right-handed helical
right closed interval
right open interval
right value axis
rigid
ring
rna gene
rna mediated regulation of translation
roentgenium atom
role
row
rubidium atom
ruthenium atom
rutherfordium atom
SADI semantic web service
SADI web service invocation
SOAP web service
sadness
samarium atom
sample
sample quality
sampling
satisfaction
satisfaction qualifier
satisfied qualifier
scalar
scaled value axis
scandium atom
scatterplot
scientific data
scientific name
seaborgium atom
second
second messenger
secondary active transport
secondary category axis
secondary graph title
secondary structure descriptor
secondary title
secretary role
selenium atom
semantic web service
sentence
sequence
sequence alignment
sequence assembly
sequence element position
sequence end position
sequence motif
sequence profile
sequence start position
sequence variant role
sequence variation notation
set
set item
severe
shame
shape
shock
shyness
sick
sign language
signal
signal transducer
silicon atom
silver atom
single arrowed line segment
single bond
single displacement reaction
single nucleotide polymorphism
site
slide
slideshow
slope
small cytoplasmic RNA (scRNA)
small cytoplasmic RNA (scRNA) gene
small nuclear RNA (snRNA)
small nuclear RNA (snRNA) gene
small nucleolar RNA (snoRNA)
small nucleolar RNA (snoRNA) gene
social entity
social relation
social role
social structure
sodium atom
software application
software entity
software interpreter
software library
software method
software module
software process identifier
software script
software version label
sofware execution
solid state hard drive
solute
solvent
some of the time
sorrow
sound argument
sound wave
spatial boundary
spatial quantity
spatial region
spatial specification
specialized material entity
specialized object
specific gravity
specification
specimen
speculation
speech
speed
spherical coordinate system
splice site
stack graph
stacked bar graph
standard
standard deviation
standard operating procedure
standard score
start codon
start date
start point
start position
start time
state
statement
statement of consequence
stationary point
statistical association
statistical graph
statistical graph line
status descriptor
statute
stereoisomer
stop codon
straight
strain
streamgraph
street name
strong
strong chemical salt
strong submolecular component
strontium atom
structural isomer
structural motif
structural quality
structure
student
student advisor role
student role
study
study design
study group
study subject
subcellular entity
subject role
submolecular entity
submolecule
substrate
substrate role
suffering
suicidal
sulfur atom
sum
supernatant
surface area
surface normal
surprise
suspended
syllable
symbol
symport enabled secondary active transport
syndrome
synonym
synthesis reaction
synthetic quality
t-statistic
t-statistic based decreased differential gene expression
t-statistic based increased differential gene expression
table
table of contents
tag cloud
tantalum atom
target
technetium atom
technical report
telephone
telephone number
television program
tellurium atom
temporal qualifier
tensor
terbium atom
term
term variant
terminal point
terminology
territory
terror
tertiary structure descriptor
test role
text quality
text span
text span end position
text span start position
textual chart
textual entity
thallium atom
therapeutic gene-disease association
thesis document
thickness
thorium atom
thulium atom
tick mark
time instant
time interval
time measurement
tin atom
tissue
titanium atom
title
to actively interact with
to add a covalent bond
to assemble
to associate
to be a member of
to be a part of
to be activated
to be actively interacted with
to be cleaved
to be combined
to be compared
to be conformationally changed
to be covalently modified
to be electronically modified
to be examined
to be inhibited
to be interacted with
to be modified
to be observed
to be passively interacted with
to be recorded
to be translocated
to be transported
to bind to
to boil
to breathe
to cause disease
to change appearance
to change energetically
to change materially
to change spatially
to change the activation energy
to characterize
to cleave
to combine
to compare
to conformationally activate
to conformationally inhibit
to consume
to contain
to cool
to covalently modify
to decode information
to decrease the rate of formation
to demagnify
to describe
to disassemble
to disassociate
to distort
to emit
to encode information
to examine
to excite
to extract
to filter
to fluoresce
to freeze
to gain a covalent bond
to gain an electron
to heat
to identify
to immobilize
to increase the activation energy
to increase the rate of formation
to infect
to ingest
to inject
to interact and to be interacted with
to interact with
to investigate
to ionize
to lose a covalent bond
to lose an electron
to luminesce
to magnify
to maintain information
to measure
to modify
to modify conformation of
to modify electronically
to modify oxidation state of
to negatively charge
to observe
to oxidize
to passively interact with
to positively charge
to produce
to provide
to record
to reduce
to reduce energy
to reduce the activation energy
to regulate
to regulate the rate of formation
to remove a covalent bond
to retrieve
to separate
to serve as
to serve as a host
to serve as a primer for DNA synthesis
to serve as a template for DNA synthesis
to serve as a template for molecular synthesis
to serve as a template for protein synthesis
to serve as a template for RNA synthesis
to store
to supply electricity
to supply energy
to test a hypothesis
to translocate
to transport
top value axis
township
toxic
toxic role
toxicity
toxin role
trans-regulatory element
transcription
transfer RNA (tRNA)
transfer RNA (tRNA) gene
translation
transporting
tree diagram
treemap
trend line
triangle
triple bond
true
truth value
tungsten atom
URL
uncertainty value
uncharged
undergraduate student advisor role
unicellular organism
unigene cluster
union
unique cell
unique identifier
unit of measurement
university
unsupported
ununhexium atom
ununoctium atom
ununpentium atom
ununquadium atom
ununseptium atom
unutrium atom
uranium atom
user account
valid argument
validated gene
value axis
van der Waals interaction
vanadium atom
variable
variant role
vector
vector line
vector space
velocity
venn diagram
verbal language
verbal language entity
version label
versioned dataset
versioned record
vertex normal
vertical bar graph
vertical line
very dissatisfied qualifier
very good quality
very poor quality
viroid
virtual
virus
visual language entity
vocabulary
volume
volume number
vowel
wave
weak
weak chemical salt
weak submolecular component
web page
web service
web service invocation
website
week
width
wonder
word
word end position
word start position
word tree
work phone number
workflow
worm
worry
written
written language
x-axis
x cartesian coordinate
xenon atom
y-axis
y cartesian coordinate
year
ytterbium atom
yttrium atom
z-axis
z cartesian coordinate
zinc atom
zirconium atom
zygosity
Properties (237)
citesAsAuthority
contributor
creator
description
alternative
contributor
creator
description
issued
license
modified
rights
title
homepage
comment
defaultLanguage
affects
broaderThan
cites
contains
denotes
derives into
describes
encodes
equivalentTo
exists at
has agent
has annotation
has attribute
has basis
has boundary
has capability
has component part
has concretization
has creator
has data item
has direct part
has disposition
has end time
has evidence
has expression
has first part
has frequency
has function
has identifier
has implementation
has input
has last part
has measurement value
has member
has ordered part
has output
has parameter
has part
has participant
has phenotype
has product
has proper part
has property
has provider
has quality
has realizable property
has role
has source
has start time
has substrate
hasSynonym
has target
has time boundary
has trigger
has unique identifier
has unit
has value
immediately derives into
immediately precedes
immediately transforms into
in relation from
in relation to
is about
is adjacent to
is affected by
is agent in
is alternate of
is annotation of
is associated with
is attribute of
is base for
is boundary of
is broad match to
is broader than
is broader than (t)
is capability of
is causally related from
is causally related to
is causally related with
is cited by
is close match to
is comparable to
is component part of
is concretization of
is connected to
is contained in
is correlated with
is covalently connected to
is covalently connected to (transitive)
is creator of
is data item in
is denoted by
is derived from
is described by
is direct part of
is directly after
is directly before
is directly connected to
is disposition of
is disputed by
is disputing evidence for
is dissimilar to
is encoded by
is end time of
is equal to
is evidence for
is exact match to
is expression of
is first part of
is frequency of
is function of
is generalization of
is generically related with
is greater than
is greater than or equal to
is homologous to
is identical to
is identifier for
is immediately derived from
is immediately preceded by
is immediately transformed from
is implementation of
is inequal to
is input in
is last part of
is lesser than
is lesser than or equal to
is located in
is location of
is manifestation of
is manifested as
is match to
is measurement value of
is member of
is model of
is modelled by
is mutual capability of
is mutual disposition of
is mutual role of
is mutually related to
is narrower than
is narrower than (t)
is numerically comparable to
is opposite to
is ordered part of
is orthologous to
is output of
is paralogous to
is parameter in
is part of
is participant in
is phenotype of
is positionally after
is positionally before
is preceded by
is prior version of
is product of
is proper part of
is property of
is provider of
is quality of
is realizable property of
is realized in
is referenced by
is referred to by
is refuted by
is refuting evidence for
is regulated by
is related to
is represented by
is result of
is role of
is satisfied by
is similar to
is source of
is spatiotemporally related to
is specialization of
is specified by
is start time of
is subject of
is subsequent version of
is supported by
is supporting evidence for
is surrounded by
is target in
is time boundary of
is transcribed from
is transcribed into
is transformed from
is transitively related to
is translated from
is translated into
is trigger for
is unique identifier for
is unit of
is variant of
is version of
is weakly interacting with
is weakly interacting with (transitive)
is xenologous to
measured at
negatively regulates
overlaps with
positively regulates
precedes
realizes
references
refers to
regulates
represents
results in
satisfies
similarTo
specifies
subset
surrounds
transforms into
exactMatch
example
preferredNamespacePrefix
preferredNamespaceUri
Home
Entities
Classes
Classes Tree
Tree
entity
attribute
quality
assertional qualifier
negative
positive
existence quality
hypothetical
fictional
predicted
real
unsupported
virtual
informational quality
agreement quality
agreement
consensus
full agreement
disagreement
full disagreement
quality descriptor
excellent quality
good quality
neither good nor poor quality
poor quality
very good quality
very poor quality
quantity modifier
a little quantifier
completely quantifier
moderately quantifier
mostly quantifier
none quantifier
satisfaction qualifier
dissatisfied qualifier
neither satisfied or dissatisfied qualifier
satisfied qualifier
very dissatisfied qualifier
status descriptor
temporal qualifier
always
most of the time
never
some of the time
truth value
false
true
intensity
fatal
mild
moderate
severe
strong
weak
normality
abnormal
decreased
increased
normal
object quality
biological quality
biological sex
female
intersex
hermaphrodite
male
cellular quality
ploidy
disease
ethnicity
life status
alive
healthy
sick
dead
parental transmission
maternally transmitted
paternally transmitted
phenotype
race
zygosity
hemizygous
heterozygous
homozygous
nullizygous
chemical quality
charge quality
charged
complete charge
negative charge
positive charge
partial charge
partial negative charge
partial positive charge
uncharged
coding frame offset
molecular orbital
molecular structure descriptor
biomolecular structure descriptor
primary structure descriptor
biopolymer sequence
nucleic acid sequence
coding sequence
deoxyribonucleic acid sequence
ribonucleic acid sequence
protein sequence
sequence assembly
quaternary structure
secondary structure descriptor
tertiary structure descriptor
3d structure model
polar quality
non-polar
polar
toxicity
non toxic
toxic
compositional quality
heterogeneous
homogeneous
fitness
mereological quality
containment quality
empty
full
object relational quality
replica quality
sample quality
synthetic quality
shape
curvature
bent
curved
straight
structural quality
disordered
helicity
circularly helical
left-handed helical
right-handed helical
rigid
text quality
written
draft
finalized
reviewed
editor reviewed
peer-reviewed
process quality
process status
aborted
completed
not started
cancelled
planned
ongoing
suspended
realizable entity
capability
disposition
mutual disposition
to interact and to be interacted with
dysfunction
function
to be interacted with
to be actively interacted with
to be modified
to be cleaved
to be combined
to be a part of
to be conformationally changed
to be activated
to be inhibited
to be covalently modified
to gain a covalent bond
to lose a covalent bond
to be electronically modified
to gain an electron
to lose an electron
to be transported
to luminesce
to fluoresce
to be passively interacted with
to be observed
to be examined
to be compared
to be recorded
to be translocated
to breathe
to interact with
to actively interact with
to assemble
to associate
to bind to
to consume
to ingest
to decode information
to encode information
to investigate
to identify
to measure
to maintain information
to modify
to change appearance
to demagnify
to distort
to magnify
to change energetically
to change the activation energy
to increase the activation energy
to reduce the activation energy
to modify electronically
to ionize
to negatively charge
to positively charge
to modify oxidation state of
to oxidize
to reduce
to reduce energy
to cool
to freeze
to emit
to supply energy
to excite
to heat
to boil
to supply electricity
to change materially
to cause disease
to combine
to covalently modify
to add a covalent bond
to remove a covalent bond
to disassemble
to cleave
to change spatially
to contain
to immobilize
to disassociate
to inject
to infect
to modify conformation of
to conformationally activate
to conformationally inhibit
to regulate
to regulate the rate of formation
to decrease the rate of formation
to increase the rate of formation
to separate
to extract
to filter
to produce
to record
to retrieve
to provide
to serve as
to serve as a host
to serve as a primer for DNA synthesis
to serve as a template for molecular synthesis
to serve as a template for DNA synthesis
to serve as a template for protein synthesis
to serve as a template for RNA synthesis
to store
to transport
to passively interact with
to be a member of
to describe
to characterize
to observe
to examine
to compare
to test a hypothesis
to translocate
role
abstract role
comparative role
duplicate role
replicate role
variant role
sequence variant role
deletion variant role
insertion variant role
positional role
processual role
chemical entity role
chemical substance role
buffer role
host role
reagent role
toxic role
poison role
toxin role
molecular entity role
cofactor role
co-enzyme role
co-substrate role
prosthetic group role
product role
reactant role
molecular tracer role
substrate role
co-enzyme role
co-substrate role
prosthetic group role
regulator role
activator role
catalytic role
inhibitor role
investigational role
evaluation role
control role
test role
subject role
social role
occupational role
academic role
department chair role
professor role
student advisor role
graduate student advisor role
undergraduate student advisor role
student role
administrative role
secretary role
medical role
dentist role
doctor role
nurse role
patient role
publishing role
author role
publisher role
object
information content entity
computational entity
cell (informational)
referencing cell
referent cell
unique cell
column
database column
data item
dataset
versioned dataset
metadata
scientific data
biological data
bioinformatic data
genetic data
medical data
chemical data
database
database entry
database key
foreign database key
primary database key
database table
namespace
ovopub
assertion ovopub
collection ovopub
row
database row
software entity
software application
software interpreter
web service
REST web service
SOAP web service
semantic web service
SADI semantic web service
software library
software method
software module
software script
user account
geometric entity
collection of points
curve
arc
curve segment
line
edge
infinite line
line segment
directed line segment
arrowed line segment
double arrowed line segment
single arrowed line segment
axis
category axis
primary category axis
secondary category axis
value axis
bottom value axis
Cartesian coordinate axis
x-axis
y-axis
z-axis
left value axis
right value axis
scaled value axis
linear value axis
logarithmic value axis
top value axis
polygon edge
tick mark
major tick mark
minor tick mark
positionally oriented line
horizontal line
vertical line
ray
vector line
surface normal
vertex normal
statistical graph line
drop line
trend line
decreasing line
increasing line
plateau line
point
1D cartesian point
2D cartesian point
3D cartesian point
data point
stationary point
local maximum stationary point
global maximal stationary point
local minimum stationary point
global minimal stationary point
node
polygon vertex
terminal point
endpoint
start point
polygon
quadrilateral
rectangle
bar
triangle
polygonal face
polyhedral skeleton
polyhedral surface
polyline
language entity
character
description
annotation
answer
definition
history
evolutionary lineage
family history
medical history
proposition
argument
deductive argument
inductive argument
invalid argument
valid argument
sound argument
belief
opinion
diagnostic opinion
speculation
comment
conclusion
diagnosis
evidence
hypothesis
idea
justification
reason
purpose
objective
premise
prognosis
statement
statement of consequence
specification
action specification
experimental protocol
standard operating procedure
study design
pathway
chemical reaction pathway
biochemical pathway
metabolic pathway
pharmacokinetic pathway
regulatory pathway
pharmacodynamic pathway
chemical degradation pathway
chemical synthesis pathway
plan
recipe
functional specification
design
design specification
criterion
exclusion criterion
inclusion criterion
formal specification
ontology
vocabulary
terminology
genotype
measurement scale
binary scale
nomimal scale
numeric scale
decimal scale
integer scale
spatial specification
coordinate system
cartesian coordinate system
cylindrical coordinate system
polar coordinate system
spherical coordinate system
structure
chemical structure
electronic structure
molecular structure
crystal structure
vocabulary
terminology
notation
chemical notation
InCHI notation
sequence variation notation
hgvs notation
standard
syndrome
language
sign language
verbal language
written language
morpheme
phrase
sentence
clause
question
term
concept
category
descriptor
keyword
label
identifier
informational entity identifier
email address
IP number
record identifier
PDB record identifier
software process identifier
telephone number
cellular phone number
fax number
home phone number
work phone number
URL
physical entity identifier
chemical identifier
molecular identifier
microarray probe set identifier
PDB chain identifier
positional identifier
address
apartment number
street name
unique identifier
version label
document version
software version label
major version number
minor version number
revision number
language label
name
brand name
common name
first name
generic name
last name
middle name
middle initial
personal name
legal name
preferred name
scientific name
gene symbol
namespace label
numeric label
title
document title
graph title
primary title
primary graph title
secondary graph title
secondary title
term variant
antonym
homonym
hypernym
hyponym
synonym
textual entity
document
booklet
diary
email
legal document
bill
brief
legislation
patent
statute
letter
manuscript
note
ontology document
OBO ontology
OWL ontology
RDFS ontology
publication
article
peer reviewed article
blog
book
book volume
conference proceedings
edited publication
issue
manual
novel
technical report
thesis document
honor's thesis
master's thesis
phd thesis
record
medical health record
versioned record
report
medical report
web page
document component
citation
document section
abstract section
acknowledgements section
author contribution section
author section
bibliography section
book section
chapter
copyright section
correspondence section
discussion section
introduction section
materials and methods section
materials section
methods section
results section
table of contents
reference
excerpt
quote
paragraph
text span
verbal language entity
consonant
syllable
vowel
visual language entity
word
mathematical entity
algorithm
workflow
association
chemical-disease association
chemical-gene assocation
chemical-pathway association
database cross-reference
exact cross-reference
epimer association
gene-disease association
gene-disease biomarker association
...se association linked with altered gene expression
...isease association linked with genomic alterations
fusion gene-disease association
... association linked with chromosomal rearrangement
...-disease association linked with genetic variation
...ne-disease association linked with causal mutation
...e association linked with germline causal mutation
...se association linked with somatic causal mutation
...disease association linked with modifying mutation
...ssociation linked with germline modifying mutation
...association linked with somatic modifying mutation
...se association linked with susceptibility mutation
...iation linked with post-translational modification
therapeutic gene-disease association
statistical association
correlation
equation
differential equation
ordinary differential equation
partial differential equation
movement equation
diffusion equation
interval
left closed interval
closed interval
left open interval
open interval
page range
right closed interval
closed interval
right open interval
open interval
logical operator
conjunction (and)
disjunction (or)
exclusive disjunction (xor)
implies (->)
negation (not)
pattern
sequence motif
sequence profile
structural motif
set
class
collection
a collection of duplicates
a collection of replicates
catalog
collection of 3d molecular structure models
collection of documents
book series
periodical
journal
magazine
newspaper
website
collection of points
protein family
sequence alignment
multiple sequence alignment
pairwise sequence alignment
unigene cluster
empty set
interval
left closed interval
closed interval
left open interval
open interval
page range
right closed interval
closed interval
right open interval
open interval
list
data series
intersection
ordered list
author list
sequence
union
set item
collection item
duplicate
replicate
list item
ordered list item
tensor
rank nonzero tensor
matrix
vector
scalar
number
measurement value
position
altitude
center of mass
coordinate
cartesian coordinate
3D cartesian coordinate
x cartesian coordinate
y cartesian coordinate
z cartesian coordinate
polar coordinate
geographic position
latitude
longitude
postal code
linear position
end position
sequence end position
text span end position
word end position
ordinal position
character position
process number
sequence element position
sequence end position
sequence start position
start position
sequence start position
text span start position
word start position
orientation
quantity
centrality measure
mean
median
mode
dimensional quantity
age
dose
effective dose
gene expression value
protein expression value
rate of change
frequency
speed
velocity
spatial quantity
1D extent quantity
depth
thickness
height
length
width
2D extent quantity
area
surface area
length of perimeter
circumference
3D extent quantity
concentration
density
volume
mass
time measurement
time instant
date of database submission
date of issue
end date
end time
start date
start time
time interval
century
day
hour
millennium
minute
month
second
week
year
dimensionless quantity
count
copy number variation
difference in number of objects produced
decrease in number of objects produced
increase in number of objects produced
edition number
generation number
member count
number of objects consumed
number of objects produced
page number
page total
volume number
pH
probability measure
expected value
probability value
standard score
quantile
percentile
ratio
aspect ratio
differential gene expression ratio
...istic based decreased differential gene expression
...istic based increased differential gene expression
DisGeNET disease specificity
DisGeNET Pleiotropy Index
percentage
slope
specific gravity
t-statistic
likelihood
log likelihood
maximal value
minimal value
standard deviation
sum
uncertainty value
unit of measurement
variable
control variable
dependent variable
independent variable
parameter
default parameter
vector space
media
audio recording
figure
chart
bubble chart
flowchart
Gantt chart
heatmap
geographic heatmap
histogram
block histogram
map
matrix chart
mereological chart
pie chart
treemap
network diagram
directed acyclic graph
tree diagram
dendrogram
statistical graph
bar graph
horizontal bar graph
stacked bar graph
vertical bar graph
line-bar graph
boxplot
line graph
scatterplot
stack graph
streamgraph
textual chart
phrase net diagram
tag cloud
word tree
venn diagram
image
photograph
geographic image
table
figure part
legend
plot
file
molecular structure file
PDB file
movie
slide
slideshow
television program
representation
model
object model
process model
symbol
social entity
social relation
affiliation
social structure
collective
community
family
organization
academic organization
academic department
university
corporation
institute
regulatory authority
drug regulatory authority
population
human population
ethnic group
study group
control group
intervention group
material entity
chemical entity
atom
actinium atom
aluminium atom
americium atom
antimony atom
argon atom
arsenic atom
astatine atom
barium atom
berkelium atom
beryllium atom
bismuth atom
bohrium atom
boron atom
bromine atom
cadmium atom
caesium atom
calcium atom
californium atom
carbon atom
cerium atom
chlorine atom
chromium atom
cobalt atom
copernicium atom
copper atom
curium atom
darmstadtium atom
dubnium atom
dysprosium atom
einsteinium atom
erbium atom
europium atom
fermium atom
fluorine atom
francium atom
gadolinium atom
gallium atom
germanium atom
gold atom
hafnium atom
hassium atom
helium atom
holmium atom
hydrogen atom
indium atom
iodine atom
iridium atom
iron atom
krypton atom
lanthanum atom
lawrencium atom
lead atom
lithium atom
lutetium atom
magnesium atom
manganese atom
meitnerium atom
mendelevium atom
mercury atom
molybdemum atom
neodymium atom
neon atom
neptunium atom
nickel atom
niobium atom
nitrogen atom
nobelium atom
osmium atom
oxygen atom
palladium atom
phosphorus atom
platinum atom
plutonium atom
polonium atom
potassium atom
praseodymium atom
promethium atom
protactinium atom
radium atom
radon atom
rhenium atom
rhodium atom
roentgenium atom
rubidium atom
ruthenium atom
rutherfordium atom
samarium atom
scandium atom
seaborgium atom
selenium atom
silicon atom
silver atom
sodium atom
strontium atom
sulfur atom
tantalum atom
technetium atom
tellurium atom
terbium atom
thallium atom
thorium atom
thulium atom
tin atom
titanium atom
tungsten atom
ununhexium atom
ununoctium atom
ununpentium atom
ununquadium atom
ununseptium atom
unutrium atom
uranium atom
vanadium atom
xenon atom
ytterbium atom
yttrium atom
zinc atom
zirconium atom
chemical substance
analyte
binary compound
ionic compound
catalyst
centrifugation substance
centrifugation pellet
supernatant
chemical complex
molecular complex
chromosome
double stranded nucleic acid
double stranded DNA
double stranded RNA
protein complex
antibody
drug
pharmaceutical drug
biologic
poison
heterogeneous substance
biological entity
biological fluid
cell
unicellular organism
e.coli
cell line
genome
organ
organism
cellular organism
multicellular organism
human
mouse
rat
worm
unicellular organism
e.coli
host
non-cellular organism
viroid
virus
pathogen
strain
subcellular entity
tissue
chemical salt
strong chemical salt
weak chemical salt
device
communication device
radio receiver
telephone
data collection device
mass spectrometer
microarray device
nmr device
data storage device
hard disk drive
solid state hard drive
radar
liquid solution
liquid solution component
acid
base
buffer
solute
solvent
nonpolar solvent
polar solvent
placebo
reagent
sample
specimen
wave
sound wave
homogeneous substance
chemical element
allotrope
carbon allotrope
aggregated carbon nanorods
amorphous carbon
carbon nanofoam
chaoite
diamond
fullerene
glassy carbon
graphite
ionsdaleite
ingredient
pharmaceutical ingredient
active ingredient
inactive ingredient
ion
anion
cation
molecule
antigen
isomer
stereoisomer
diastereomer
enantiomer
epimer
optical isomer
structural isomer
ligand
molecular regulator
activator
inhibitor
organic molecule
amino acid
lipid
monosaccharide
organic polymer
amino acid polymer
oligopeptide
peptide
polypeptide
protein
enzyme
biopolymer
carbohydrate
nucleic acid
deoxyribonucleic acid
deoxyribonucleic acid primer
deoxyribonucleic acid template
nucleic acid strand
negative nucleic acid strand
positive nucleic acid strand
ribonucleic acid
RNA transcript
messenger RNA
mRNA splice variant
mature mRNA
pre-mRNA
non-protein coding RNA (ncRNA)
microRNA (miRNA)
small cytoplasmic RNA (scRNA)
small nuclear RNA (snRNA)
small nucleolar RNA (snoRNA)
transfer RNA (tRNA)
polymer
product
signal
signal transducer
messenger
second messenger
receptor
submolecular entity
strong submolecular component
covalent bond
aromatic bond
double bond
single bond
disulfide bond
triple bond
submolecule
chemical functional group
ring
aromatic ring
heterocyclic ring
homocyclic ring
monomer
organic submolecule
amino acid polymer submolecule
alpha helix
amino acid residue
beta strand
post-translational modification
protein domain
carbohydrate residue
lipid residue
nucleic acid part
cis regulatory element
gene
allele
dna gene
non-protein coding RNA (ncRNA) gene
ribosomal RNA gene
small cytoplasmic RNA (scRNA) gene
small nuclear RNA (snRNA) gene
small nucleolar RNA (snoRNA) gene
transfer RNA (tRNA) gene
predicted gene
protein coding gene
rna gene
functional rna coding gene
validated gene
gene component
3' untranslated region
5' untranslated region
exon
gene regulatory component
gene enhancer
gene promoter
intron
open reading frame
protein coding sequence
genetic polymorphism
genomic sequence variant
haplotype
nucleotide residue
deoxyribonucleotide residue
ribonucleotide residue
single nucleotide polymorphism
operon
pseudogene
RNA transcript component
splice site
3' splice site
5' splice site
start codon
stop codon
trans-regulatory element
weak submolecular component
base pair
base stack
dipole-dipole interaction
hydrogen bond
low barrier hydrogen bond
ionic interaction
cation pi interaction
van der Waals interaction
spatial region
geographic region
environment
geolegal region
geopolitical region
city
country
province
state
territory
township
site
hole
molecular site
active site
binding site
allosteric site
molecular pocket
spatial boundary
material boundary
specialized object
anatomical entity
person
academic
professor
student
medical practitioner
doctor
nurse
patient
study subject
specialized material entity
process
behaviour
emotion
indifference
apathy
negative emotion
annoyance
frustration
apprehension
anxiety
angst
fear
dread
terror
panic
worry
regret
remorse
boredom
disappointment
discouragement
embarassment
envy
jealousy
guilt
hostility
disgust
anger
rage
contempt
hate
loathing
resentment
hunger
hurt
humiliation
pain
suffering
hysteria
indecision
irritability
loneliness
pity
sadness
depression
despair
grief
misery
sorrow
shame
shock
shyness
suicidal
positive emotion
affection
arousal
awe
boldness
ecstasy
excitement
gratitude
happiness
contentment
satisfaction
pride
euphoria
joy
pleasure
hope
interest
desire
curiosity
intent
lust
passion
love
satisfaction
pride
surprise
wonder
interacting
chemical interaction
chemical effect
drug drug interaction
chemical exposure
chemical reaction
acid-base reaction
catalyzed reaction
biochemical reaction
inorganic reaction
decomposition reaction
displacement reaction
double displacement reaction
single displacement reaction
synthesis reaction
isomerization reaction
molecular modification
organic reaction
addition reaction
non-polar addition reaction
free radical addition
polar addition reaction
electrophilic addition reaction
nucleophilic addition reaction
redox reaction
metabolism
anabolism
catabolism
communicating
conversing
gesturing
speech
comparing
creating
birthing
chemical synthesis
biosynthesis
transcription
translation
molecular complex formation
evolving
learning
planning
predicting
reasoning
reproducing
biological reproduction
destroying
chemical destruction
decreased chemical destruction
increased chemical destruction
molecular complex dissociation
dying
measuring
modifying
observing
perception
regulating
regulation of capability
regulation of catalytic capability
biochemical activation
biochemical inhibition
regulation of process
process down-regulation
process maintenance
information maintenance
process up-regulation
regulation of biochemical process
regulation of transcription
regulation of translation
protein mediated regulation of translation
rna mediated regulation of translation
regulation of object quantity
regulation of molecular quantity
regulation of molecular degradation
...ed molecular degradation from decreased regulation
...ed molecular degradation from increased regulation
...ed molecular degradation from decreased regulation
...ed molecular degradation from increased regulation
regulation of molecular production
...sed molecular production from decreased regulation
...sed molecular production from increased regulation
...sed molecular production from decreased regulation
...sed molecular production from increased regulation
regulation of object consumption
...eased object consumption from increased regulation
...eased object consumption from increased regulation
maintenance of level of object consumption
regulation of object production
...reased object production from increased regulation
...reased object production from increased regulation
maintenance of quantity of object production
regulation of process duration
...ased duration of process from increased regulation
...ased duration of process from increased regulation
maintenance of duration of process
regulation of process frequency
...sed frequency of process from increased regulation
...sed frequency of process from increased regulation
maintenance of frequency of process
regulation of process spatial extent
...patial extent of process from decreased regulation
...patial extent of process from increased regulation
maintenance of spatial extent of process
sampling
transporting
chemical transport
membrane transport
active transport
primary active transport
secondary active transport
antiport enabled secondary active transport
symport enabled secondary active transport
passive transport
movement
active movement
locomotion
passive movement
diffusion
brownian motion
osmosis
procedure
assay
information processing
data analysis
data collection
data transformation
parameterized data transformation
information translation
information decoding
information encoding
literature curation
sofware execution
web service invocation
SADI web service invocation
investigation
experiment
intervention study
clinical trial
mass spectrometry experiment
microarray experiment
observational study
controlled observational cohort study
study
medical procedure
diagnostic test
differential diagnosis
medical diagnosis
medical intervention
medical screening
primer
deoxyribonucleic acid primer
target
substrate