Has unit leaf node


URI

https://w3id.org/omop/ontology/has_unit

Label

Has unit

Description

For Dose Era: The Concept Id representing the unit of the specific drug ingredient. - For Specimen: The unit for the quantity of the specimen.
Map the UNIT_SOURCE_VALUE to a Standard Concept in the Unit domain. [Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Unit&standardConcept=Standard&page=1&pageSize=15&query=) - For Measurement: There is currently no recommended unit for individual measurements, i.e. it is not mandatory to represent Hemoglobin a1C measurements as a percentage. UNIT_SOURCE_VALUES should be mapped to a Standard Concept in the Unit domain that best represents the unit as given in the source data.
There is no standardization requirement for units associated with MEASUREMENT_CONCEPT_IDs, however, it is the responsibility of the ETL to choose the most plausible unit. - For Observation: There is currently no recommended unit for individual observation concepts. UNIT_SOURCE_VALUES should be mapped to a Standard Concept in the Unit domain that best represents the unit as given in the source data.
There is no standardization requirement for units associated with OBSERVATION_CONCEPT_IDs, however, it is the responsibility of the ETL to choose the most plausible unit.

Usage

DOMAINPROPERTYRANGE
Blank node (see implementation) Has unit Concept

Implementation

@prefix omop: <https://w3id.org/omop/ontology/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix owlready: <http://www.lesfleursdunormal.fr/static/_downloads/owlready_ontology.owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

omop:has_unit a owl:FunctionalProperty,
        owl:ObjectProperty ;
    rdfs:label "Has unit"^^xsd:string ;
    owlready:python_name "unit"^^xsd:string ;
    rdfs:comment "For Dose Era: The Concept Id representing the unit of the specific drug ingredient."@en,
        """For Measurement: There is currently no recommended unit for individual measurements, i.e. it is not mandatory to represent Hemoglobin a1C measurements as a percentage. UNIT_SOURCE_VALUES should be mapped to a Standard Concept in the Unit domain that best represents the unit as given in the source data.
There is no standardization requirement for units associated with MEASUREMENT_CONCEPT_IDs, however, it is the responsibility of the ETL to choose the most plausible unit."""@en,
        """For Observation: There is currently no recommended unit for individual observation concepts. UNIT_SOURCE_VALUES should be mapped to a Standard Concept in the Unit domain that best represents the unit as given in the source data.
There is no standardization requirement for units associated with OBSERVATION_CONCEPT_IDs, however, it is the responsibility of the ETL to choose the most plausible unit."""@en,
        """For Specimen: The unit for the quantity of the specimen.
Map the UNIT_SOURCE_VALUE to a Standard Concept in the Unit domain. [Accepted Concepts](https://athena.ohdsi.org/search-terms/terms?domain=Unit&standardConcept=Standard&page=1&pageSize=15&query=)"""@en ;
    rdfs:domain [ a owl:Class ;
            owl:unionOf ( omop:Observation omop:Measurement omop:DoseEra omop:Specimen ) ] ;
    rdfs:range omop:Concept ;
    omop:omop_cdm_name "dose_era.unit_concept_id#335 AS Concept"^^xsd:string,
        "measurement.unit_concept_id#139 AS Concept"^^xsd:string,
        "observation.unit_concept_id#159 AS Concept"^^xsd:string,
        "specimen.unit_concept_id#214 AS Concept"^^xsd:string .